Publications

NOTE: The copyrights for these publications are held by the journals in which they were originally published. Please act accordingly.

Liu S, Wu Y, Lin T, Abel R, Redmann JP, Summa CM, Jaber V, Lim NM and Mobley DL Lead Optimization Mapper: Automatic free energy calculations for lead optimization J Comput Aided Mol Des doi: 10.1007/s10822-013-9678-y (2013) (PDF format)

Craig RB, Summa CM, Corti M, and Pincus SH Anti-HIV Double Variable Domain Immunoglobulins Binding Both gp41 and gp120 for Targeted Delivery of Immunoconjugates PLoS ONE 7(10) : e46778. doi:10.1371/journal.pone.0046778 (2012) (PDF format)

Garay J, D'Angelo J, Park YK, Summa CM, Aiken ML, Morales E, Badizadegan K, Fiebiger E, and Dickinson BL Crosstalk Between PKA and Epac Regulates the Phenotypic Maturation and Function of Human Dendritic Cells Journal of Immunology 2010 (185) 3227-3238 (PDF format)

Zhao Z, Fu B, Alanis FJ, and Summa CM Feedback Algorithm and Web-Server for Protein Structure Alignment Journal of Computational Biology 2008 (15) 505-524 (PDF format)

Chopra G, Summa CM, and Levitt M Solvent Dramatically Affects Protein Structure Refinement Proceedings of the National Academy of Sciences USA 2008 (105) 20239-20244 (PDF format) Supporting Materials (PDF format)

Summa CM and Levitt M Near Native Structure Refinement Using in vacuo Energy Minimization Proceedings of the National Academy of Sciences USA 2007 (104) 3177-3182 (PDF format)

Summa CM, DeGrado WF, and Levitt M An Atomic Environment Potential for use in Protein Structure Prediction Journal of Molecular Biology 2005 (352) 986-1001 (PDF format)

Slovic AM, Summa CM, Lear JD, DeGrado WF, Computational Design of a Water-Soluble Analog of Phospholamban, Protein Science 2003 (12) 337-348 (PDF format)

Summa CM, Rosenblatt M, Hong JK, Lear, JD, DeGrado WF, Computational de novo Design, and Characterization of an A2B2 Diiiron Protein, Journal of Molecular Biology 2002 (321) 923-938 (PDF format)

North B, Summa CM, Ghirlanda G, and DeGrado WF, Dn-Symmetrical Tertiary Templates for the Design of Tubular Proteins, Journal of Molecular Biology 2001 (311) 1081-1090 (PDF format)

Lombardi A, Summa CM, Geremia S, et. al., Retrostructural Analysis of Metalloproteins: Application to the design of a minimal model of diiron proteins, Proceedings of the National Academy of Sciences USA 2000 (97) 6298-305 (PDF format)

Summa CM, Lombardi A, Lewis M, DeGrado WF, Tertiary Templates for the Design of Diiron Proteins, Current Opinion in Structural Biology 1999 (9) 500-508. (PDF format)

DeGrado WF, Summa CM, Pavone V, Nastri F, Lombardi A, De Novo Design and Structural Characterization of Proteins and Metalloproteins, Annual Review of Biochemistry 1999 (68) 779-819 (PDF format)

Computational Methods and their Applications for de novo Functional Protein Design and Memebrane Protein Solubilization, my dissertation from The University of Pennsylvania with William F. DeGrado (bzip2'd PDF format 18.5M)

Meeting Posters and Abstracts

Summa CM and Levitt M, Using a Knowledge-Based Potential for Energy Refinement of Near-Native Protein Structure Models, CASP7 Meeting - Asilomar, CA November 2006 (Poster and Invited Talk)

Summa CM and Levitt M, Using a Knowledge-Based Potential for Energy Refinement of Near-Native Protein Structure Models, Protein Society Meeting (August 2006)

Raschke T, Summa CM, Kolodny R, and Levitt M, Ab initio structure prediction of target proteins in CASP5, CASP5 Meeting - Asilomar, CA 2002

Ghirlanda G, Summa CM, Pasternak A, Getahun Z, Lahr S, Rosenblatt MM, Lombardi A, DeGrado WF, A Parametric Approach for Understanding and Designing Metalloproteins Abstracts of Papers of the American Chemical Society 2001 (211) U699-U700

Summa CM and DeGrado WF, A Multi-body Atomic Potential Function for use in Automated de novo Protein Design Protein Society Meeting (1996)